YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STC_RICCO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	83	0.94
Transmembrane Helix	84	105	0.89
Cytoplasmic	106	112	0.86
Transmembrane Helix	113	132	0.93
Non-Cytoplasmic	133	138	0.67
Transmembrane Helix	139	160	0.89
Cytoplasmic	161	171	0.84
Transmembrane Helix	172	195	0.87
Non-Cytoplasmic	196	202	0.86
Transmembrane Helix	203	224	0.92
Cytoplasmic	225	284	0.97
Transmembrane Helix	285	308	0.85
Non-Cytoplasmic	309	320	0.80
Transmembrane Helix	321	344	0.89
Cytoplasmic	345	350	0.95
Transmembrane Helix	351	375	0.84
Non-Cytoplasmic	376	386	0.83
Transmembrane Helix	387	408	0.93
Cytoplasmic	409	428	0.84
Transmembrane Helix	429	448	0.93
Non-Cytoplasmic	449	455	0.70
Transmembrane Helix	456	477	0.92
Cytoplasmic	478	523	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAVGGIPPS GGNRKVYPGN LTLYVTVTCV VAAMGGLIFG YDIGISGGVT SMDSFLKKFF  60
   61 PSVYRKKKAD ESSNQYCQYD SQTLTMFTSS LYLAALIASL VASTITRKFG RKLSMLFGGV 120
  121 LFCAGAIING AAKAVWMLIL GRILLGFGIG FANQSVPLYL SEMAPYKYRG ALNIGFQLSI 180
  181 TIGILVANVL NYFFAKIKGG WGWRLSLGGA MVPALIITVG SLVLPDTPNS MIERGQHEEA 240
  241 RAHLKRVRGV EDVDEEFTDL VHASEDSKKV EHPWRNLLQR KYRPHLSMAI AIPFFQQLTG 300
  301 INVIMFYAPV LFDTIGFGSD AALMSAVITG LVNVFATMVS IYGVDKWGRR FLFLEGGVQM 360
  361 LICQAIVAAC IGAKFGVDGA PGDLPQWYAV VVVLFICIYV SGFAWSWGPL GWLVPSEIFP 420
  421 LEIRSAAQSV NVSVNMFFTF VVAQVFLIML CHLKFGLFIF FSFFVLIMSI FVYYFLPETK 480
  481 GIPIEEMGQV WKQHWYWSRY VVDEDYPNGG LEMGKEGRIP KNV