YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSUC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVKKWLL RVAPWFLPVG IVAVWQLASS VGWLSTRILP SPEGVVTAFW TLSASGELWQ  60
   61 HLAISSWRAL IGFSIGGSLG LILGLISGLS RWGERLLDTS IQMLRNVPHL ALIPLVILWF 120
  121 GIDESAKIFL VALGTLFPIY INTWHGIRNI DRGLVEMARS YGLSGIPLFI HVILPGALPS 180
  181 IMVGVRFALG LMWLTLIVAE TISANSGIGY LAMNAREFLQ TDVVVVAIIL YALLGKLADV 240
  241 SAQLLERLWL RWNPAYHLKE ATV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	29	0.92
Non-Cytoplasmic	30	68	0.78
Transmembrane Helix	69	89	0.93
Cytoplasmic	90	102	0.80
Transmembrane Helix	103	122	0.86
Non-Cytoplasmic	123	127	0.78
Transmembrane Helix	128	147	0.91
Cytoplasmic	148	160	0.82
Transmembrane Helix	161	183	0.83
Non-Cytoplasmic	184	188	0.61
Transmembrane Helix	189	211	0.76
Cytoplasmic	212	217	0.68
Transmembrane Helix	218	240	0.71
Non-Cytoplasmic	241	263	0.62