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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SSP5_STRGN
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.75
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKKEVYGF RKSKVAKTLC GAVLGTALIA FADKAVFADE VTETTSTSTV EVATTGNPAT  60
   61 NLPEAQGEMS QVAKESQAKA GSKESALPVE VSSADLDKAV ADAKSAGVKV VQDETKDKGT 120
  121 ATTATDNAQK QDEIKSDYAK QAEEIKTTTE AYKKEVAAHQ AETDKINAEN KAADDKYQKD 180
  181 LKSHQEEVEK INTANATAKA EYEAKLAQYQ KDLATVKKAN EDSQQDYQNK LSAYQTELAR 240
  241 VQKANAEAKE AYEKAVKENT AKNEALKVEN EAIKQRNETA KATYEAAMKQ YEADLAAIKK 300
  301 ANEDNDADYQ AKLAAYQTEL ARVQKANAEA KEAYDKAVKE NTAKNTAIQA ENEAIKQRNE 360
  361 TAKATYDAAV KKYEADLAAV KQANATNEAD YQAKLAAYQT ELARVQKANA DAKATYEKAV 420
  421 EDNKAKNAAI KAENEEIKQR NAVAKTDYEA KLAKYEADLA KYKKEFAAYT AALAEAESKK 480
  481 KQDGYLSEPR SQSLNFKSEP NAIRTIDSSV HQYGQQELDA LVKSWGISPT NPDRKKSRAY 540
  541 SYFNAINSNN TYAKLVLEKD KPVDVTYTGL KNSSFNGKKI SKVVYTYTLK ETGFNDGTKM 600
  601 TMFASSDPTV TAWYNDYFTS TNINVKVKFY DEEGQLMNLT GGLVNFSSLN RGNGSGAIDK 660
  661 DAIESVRNFN GRYIPISGSS IKIHENNSAY ADSSNAEKSL GARWNTSEWD TTSSPNNWYG 720
  721 AIVGEITQSE ISFNMASSKS GNIWFAFNSN INAIGVPTKP VAPTAPTQPM YETEKPLEPA 780
  781 PVAPSYENEP TPPVKTPDQP EPSKPEEPTY ETEKPLEPAP VAPSYENEPT PPVKTPDQPE 840
  841 PSKPEEPNYE TEKPLEPAPV APSYENEPTP PVKIPDQPEP SKPEEPTYDP LPTPPLAPTP 900
  901 KQLPTPPVVP TVHFHYSSLL AQPQINKEIK NEDGVDIDRT LVAKQSIVKF ELKTEALTAG 960
  961 RPKTTSFVLV DPLPTGYKFD LDATKAASTG FDTTYDEASH TVTFKATDET LATYNADLTK1020
 1021 PVETLHPTVV GRVLNDGATY TNNFTLTVND AYGIKSNVVR VTTPGKPNDP DNPNNNYIKP1080
 1081 TKVNKNKEGL NIDGKEVLAG STNYYELTWD LDQYKGDKSS KEAIQNGFYY VDDYPEEALD1140
 1141 VRPDLVKVAD EKGNQVSGVS VQQYDSLEAA PKKVQDLLKK ANITVKGAFQ LFSADNPEEF1200
 1201 YKQYVATGTS LVITDPMTVK SEFGKTGGKY ENKAYQIDFG NGYATEVVVN NVPKITPKKD1260
 1261 VTVSLDPTSE NLDGQTVQLY QTFNYRLIGG LIPQNHSEEL EDYSFVDDYD QAGDQYTGNY1320
 1321 KTFSSLNLTM KDGSVIKAGT DLTSQTTAET DATNGIVTVR FKEDFLQKIS LDSPFQAETY1380
 1381 LQMRRIAIGT FENTYVNTVN KVAYASNTVR TTTPIPRTPD KPTPIPTPKP KDPDKPETPK1440
 1441 EPKVPSPKVE DPSAPIPVSV GKELTTLPKT GTNDATYMPY LGLAALVGFL GLGLAKRKED1500
 1501 

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