YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SRP54_HAEIN
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFENLSDRLS KTLRNITGKG RLTEDNIKET LREVRMALLE ADVALPVVRE FIAKVKESAL  60
   61 GEEVNKSLTP GQEFLKIVQR ELEKAMGEAN ESLNLATQPP AVILMAGLQG AGKTTSVGKL 120
  121 AKFLRERHKK KVLVVSADVY RPAAIKQLET LAQSVGVDFF PSDVKQNPVD IAKSALADAK 180
  181 LKFYDVLIVD TAGRLHVDTE MMDEIKQVHA ALNPIETLFT VDAMTGQDAA NTAKAFNEAL 240
  241 PLTGVILTKV DGDARGGAAL SIRQITGKPI KFLGVGEKTE ALEPFHPDRV ASRILGMGDV 300
  301 LSLIEDLERS VDREKAEKMA QKFKKGDDFT LDDFREQLIE MKKMGGMMSM LEKLPGAKNL 360
  361 SEHVKNQVDD KMFVKMEAII NSMTLKERAN PDIIKGSRRR RIALGSGTQV QDVNKLLKQF 420
  421 DEMQRMMKKM RKGGMAKMMR GMQGLMGGGL GGLGGLGGMF KR

Type	Start	End	Confidence
Cytoplasmic	1	437	0.80
Transmembrane Helix	438	460	0.78
Non-Cytoplasmic	461	462	0.89