YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spi-PA, spi-PF, ...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSTMSVQHG LVALVLIGCL AHPWHVEACS SRTVPKPRSS ISSSMSGTAL PPTQAPVTSS  60
   61 TTMRTTTTTT PRPNITFPTY KCPETFDAWY CLNDAHCFAV KIADLPVYSC ECAIGFMGQR 120
  121 CEYKEIDNTY LPKRPRPMLE KASIASGAMC ALVFMLFVCL AFYLRFEQRA AKKAYELEQE 180
  181 LQQEYDDDDG QCECCRNRCC PDGQEPVILE RKLPYHMRLE HALMSFAIRR SNKL

Type	Start	End	Confidence
Signal Peptide	1	28	0.94
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	143	0.98
Transmembrane Helix	144	164	0.96
Cytoplasmic	165	234	0.96