YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPEE_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHESQLTTSA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM  60
   61 IGLMIVSMGL GAFAARKIKD AFTGFVVLEL TVALCGSLAI LITAAVIGFG QQLPMLIAST 120
  121 LGLPPDQLPE GGMIGTLQKL SEYLPYFWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG 180
  181 TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWQ KIQRPKLLLA 240
  241 AHLVVTGVLL LLAIQGPSWE QQFNNLLYKD KVVYAKATRF QQLTFTERLR GNGLSPVYAL 300
  301 YINGRLQFSS SDEHIYHAFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WEPEQVTLLD 360
  361 LDAALVQLFK SPDPDMPERL SQALLSLNGN AFNDPRVTVI HDDAFNGVDK LIAKGDKYDA 420
  421 IIVDLPDPSH PDLNKLYSDY FYRKLKELIS NDGALTVQST SPYHAQKAFI SVAKTLALAG 480
  481 FDVKQYHHNV PSFGEWGWSI ATLDGKDAQH RLAQLTKLPI ADDWLTLGLV KGAFEFPANF 540
  541 YQDATNIKPN ELGSLQLYHY HQQAWSETQG LDLF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	54	0.78
Transmembrane Helix	55	74	0.95
Cytoplasmic	75	84	0.83
Transmembrane Helix	85	107	0.92
Non-Cytoplasmic	108	143	0.93
Transmembrane Helix	144	164	0.93
Cytoplasmic	165	178	0.86
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	207	0.73
Transmembrane Helix	208	229	0.92
Cytoplasmic	230	237	0.88
Transmembrane Helix	238	257	0.95
Non-Cytoplasmic	258	574	0.99