YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPEE_OCEIH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNDKAIRQS KIIYWSSGIV SICGIIFEVL FGALGSYILG DGVKQYTLTI SLFLTGMGIG  60
   61 ASLSEKFMRN LIIKFVWIEF CVALIGGFSS FIMFGITAFA PAGTDAFYLY SITLIIGALT 120
  121 GVELPILIRK ANEIGVTLNK STARVLFSDY AGGLIGGVLF VFLFRPYFGM VKTAFLVGLI 180
  181 NLTVALIVLW LFRKEIRHFI VHAVIGGVIG VLLIAGLFFG EEMAFNFEQK LYQDPIIHME 240
  241 ESSYQKITVT QDEKDIRLYL DGSLQFSSVD EHRYHEVLVH PAMANVETPE NVLILGGGDG 300
  301 IAAKEVLKYQ DVKQVTLVDL DPAVVELANE NRHLLEINEG ALMDEKVEVK NMDAFQFLED 360
  361 TSEWYDVILV DLPDPNNESL NKLYTKEFYS LVRNHLKPEG TLMVQATSPV FAREVYWTIS 420
  421 ETISSTNLNT ENLHVDVPSF GNWGFVMASR EEIDLDIMEI PVSTRFLTDD MMPALTAFGK 480
  481 DEDQQIPNFE LKANTLIDPH LIQIYEKAWE NY

Type	Start	End	Confidence
Cytoplasmic	1	11	0.99
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	45	0.74
Transmembrane Helix	46	64	0.95
Cytoplasmic	65	74	0.86
Transmembrane Helix	75	99	0.90
Non-Cytoplasmic	100	105	0.89
Transmembrane Helix	106	128	0.92
Cytoplasmic	129	144	0.94
Transmembrane Helix	145	164	0.95
Non-Cytoplasmic	165	172	0.70
Transmembrane Helix	173	192	0.96
Cytoplasmic	193	198	0.93
Transmembrane Helix	199	220	0.94
Non-Cytoplasmic	221	512	0.99