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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAP_STRMU
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKKTYGFR KSKISKTLCG AVLGTVAAVS VAGQKVFADE TTTTSDVDTK VVGTQTGNPA  60
   61 TNLPEAQGSA SKEAEQSQNQ AGETNGSIPV EVPKTDLDQA AKDAKSAGVN VVQDADVNKG 120
  121 TVKTAEEAVQ KETEIKEDYT KQAEDIKKTT DQYKSDVAAH EAEVAKIKAK NQATKEQYEK 180
  181 DMAAHKAEVE RINAANAASK TAYEAKLAQY QADLAAVQKT NAANQAAYQK ALAAYQAELK 240
  241 RVQEANAAAK AAYDTAVAAN NAKNTEIAAA NEEIRKRNAT AKAEYETKLA QYQAELKRVQ 300
  301 EANAANEADY QAKLTAYQTE LARVQKANAD AKAAYEAAVA ANNAKNAALT AENTAIKQRN 360
  361 ENAKATYEAA LKQYEADLAA VKKANAANEA DYQAKLTAYQ TELARVQKAN ADAKAAYEAA 420
  421 VAANNAANAA LTAENTAIKK RNADAKADYE AKLAKYQADL AKYQKDLADY PVKLKAYEDE 480
  481 QASIKAALAE LEKHKNEDGN LTEPSAQNLV YDLEPNANLS LTTDGKFLKA SAVDDAFSKS 540
  541 TSKAKYDQKI LQLDDLDITN LEQSNDVASS MELYGNFGDK AGWSTTVSNN SQVKWGSVLL 600
  601 ERGQSATATY TNLQNSYYNG KKISKIVYKY TVDPKSKFQG QKVWLGIFTD PTLGVFASAY 660
  661 TGQVEKNTSI FIKNEFTFYD EDGKPINFDN ALLSVASLNR ENNSIEMAKD YTGKFVKISG 720
  721 SSIGEKNGMI YATDTLNFRQ GQGGARWTMY TRASEPGSGW DSSDAPNSWY GAGAIRMSGP 780
  781 NNSVTLGAIS STLVVPADPT MAIETGKKPN IWYSLNGKIR AVNVPKVTKE KPTPPVKPTA 840
  841 PTKPTYETEK PLKPAPVAPN YEKEPTPPTR TPDQAEPNKP TPPTYETEKP LEPAPVEPSY 900
  901 EAEPTPPTRT PDQAEPNKPT PPTYETEKPL EPAPVEPSYE AEPTPPTPTP DQPEPNKPVE 960
  961 PTYEVIPTPP TDPVYQDLPT PPSVPTVHFH YFKLAVQPQV NKEIRNNNDI NIDRTLVAKQ1020
 1021 SVVKFQLKTA DLPAGRDETT SFVLVDPLPS GYQFNPEATK AASPGFDVTY DNATNTVTFK1080
 1081 ATAATLATFN ADLTKSVATI YPTVVGQVLN DGATYKNNFT LTVNDAYGIK SNVVRVTTPG1140
 1141 KPNDPDNPNN NYIKPTKVNK NENGVVIDGK TVLAGSTNYY ELTWDLDQYK NDRSSADTIQ1200
 1201 KGFYYVDDYP EEALELRQDL VKITDANGNE VTGVSVDNYT NLEAAPQEIR DVLSKAGIRP1260
 1261 KGAFQIFRAD NPREFYDTYV KTGIDLKIVS PMVVKKQMGQ TGGSYENQAY QIDFGNGYAS1320
 1321 NIIINNVPKI NPKKDVTLTL DPADTNNVDG QTIPLNTVFN YRLIGGIIPA DHSEELFEYN1380
 1381 FYDDYDQTGD HYTGQYKVFA KVDITFKDGS IIKSGAELTQ YTTAEVDTAK GAITIKFKEA1440
 1441 FLRSVSIDSA FQAESYIQMK RIAVGTFENT YINTVNGVTY SSNTVKTTTP EDPTDPTDPQ1500
 1501 DPSSPRTSTV INYKPQSTAY QPSSVQETLP NTGVTNNAYM PLLGIIGLVT SFSLLGLKAK1560
 1561 KD

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