YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO2B1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.89
Transmembrane Helix	42	61	0.82
Non-Cytoplasmic	62	80	0.84
Transmembrane Helix	81	101	0.90
Cytoplasmic	102	108	0.89
Transmembrane Helix	109	130	0.93
Non-Cytoplasmic	131	182	0.90
Transmembrane Helix	183	205	0.83
Cytoplasmic	206	215	0.79
Transmembrane Helix	216	236	0.92
Non-Cytoplasmic	237	265	0.84
Transmembrane Helix	266	288	0.93
Cytoplasmic	289	359	0.91
Transmembrane Helix	360	382	0.92
Non-Cytoplasmic	383	395	0.84
Transmembrane Helix	396	420	0.89
Cytoplasmic	421	431	0.79
Transmembrane Helix	432	453	0.89
Non-Cytoplasmic	454	551	0.88
Transmembrane Helix	552	575	0.82
Cytoplasmic	576	590	0.70
Transmembrane Helix	591	610	0.75
Non-Cytoplasmic	611	638	0.79
Transmembrane Helix	639	661	0.88
Cytoplasmic	662	682	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDRSTKATM GAEDIHERKV SMEPRDSHQD AQPRGMFQNI KFFVLCHSIL QLAQLMISGY  60
   61 LKSSISTVEK RFGLSSQTSG LLAAFNEVGN ISLILFVSYF GSRVHRPRMI GCGAILVAVA 120
  121 GLLMALPHFI SEPYRYDHSS PDRSQDFEAS LCLPTTMAPA SALSNDSCSS RTETKHLTMV 180
  181 GIMFTAQTLL GIGGVPIQPF GISYIDDFAH HSNSPLYLGI LFAITMMGPG LAYGLGSLML 240
  241 RLYVDIDRMP EGGINLTTKD PRWVGAWWLG FLISAGLVVL AASPYFFFPR EMPKEKYELH 300
  301 FRQKVLAGGA SIGSKGEELS SQHEPLKKQA GLPQIAPDLT VVQFIKVFPR VLLRTLRHPI 360
  361 FLLVVLSQVC TSSMVAGTAT FLPKFLERQF SITASFANLL LGCLTIPLAI VGIVVGGVLV 420
  421 KRLHLSPMQC SALCLLGSLL CLLLSLPLFF IGCSTHHIAG ITQDLGAQPG PSLFPGCSEP 480
  481 CSCQSDDFNP VCDTSAYVEY TTPCHAGCTG RVVQEALDKS QVFYTNCSCV AGNGTISAGS 540
  541 CESACSRLVL PFILLISLGA AVASITHTPS FMLILRGVKK EDKTLAVGMQ FMLLRVLAWM 600
  601 PSPVIHGSAI DTTCVHWALT CGRRAVCRYY DHDLLRNRFI GLQFFFKSGS LVCFALVLAI 660
  661 LRQQSREAST KATVKSSDLQ EL