YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOAT1_CRIGR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.94
Transmembrane Helix	137	158	0.91
Non-Cytoplasmic	159	179	0.88
Transmembrane Helix	180	199	0.95
Cytoplasmic	200	218	0.74
Transmembrane Helix	219	241	0.85
Non-Cytoplasmic	242	315	0.69
Transmembrane Helix	316	337	0.90
Cytoplasmic	338	356	0.60
Transmembrane Helix	357	381	0.85
Non-Cytoplasmic	382	411	0.55
Transmembrane Helix	412	429	0.42
Cytoplasmic	430	439	0.78
Transmembrane Helix	440	460	0.84
Non-Cytoplasmic	461	465	0.73
Transmembrane Helix	466	486	0.93
Cytoplasmic	487	493	0.84
Transmembrane Helix	494	515	0.87
Non-Cytoplasmic	516	546	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGEEKMSLR NRLSKSGENP EQDEAQRSVS DTQSNGRITM KQLIAKKRQL AAEAEELKPL  60
   61 FLKEVGCHFD DFVTNLIEKS ASLDNGGCAL TTFSILEEMK NNHRAKDLRA PPEKGKIFIS 120
  121 RRSLLDELFE VDHIRTIYHM FIGLLILFIL STLVVDYIDE GRLVLEFNLL GYAFGKLPTV 180
  181 IWTWWAMFLS TLSIPYFLFQ RWAHGYSKTS HPLIYSLSHG FFFLVFQLGI LGFVPTYVVL 240
  241 AYTLPPASRF IVILEQIRMV MKAHSFVREN VPRVLNAAKE KSSTVPVPTV NQYLYFLFAP 300
  301 TLIYRDSYPR TPTVRWGYVA VQFLQVFGCL FYVYYIFERL CAPLFRNIKQ EPFSARVLVL 360
  361 CVFNSILPGV LMLFLTFFAF LHCWLNAFAE MLRFGDRMFY KDWWNSTSYS NYYRTWNVVV 420
  421 HDWLYYYAYK DLLWFFSKRF KSAAMLAVFA LSAVVHEYAL AVCLSYFYPV LFVLFMFFGM 480
  481 AFNFIVNDSR KRPIWNIMVW ASLFLGHGVI LCFYSQEWYA RQHCPLKNPT FLDYVRPRSW 540
  541 TCQYVF