YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMS1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSASTMKEV VYWSPKKVAD WLLENAMPEY CEPLGHFTGQ DLINLTQEDF TKPPLCRVSS  60
   61 DNGQRLLDMI ETLKMEHHIE AHKNGHANGH LSIGVDIPNP DGSFSIKIKP NGMPNGFRKE 120
  121 MIKIPMPEPE RSQYPMEWGK TLLAFLYALS CFVLTTVMIS VVHERVPPKE VQPPLPDTFF 180
  181 DHFNRVQWAF SICEINGMIL VGLWLFQWLL LKYKSIISRR FFCIVGTLYL YRCITMYVTT 240
  241 LPVPGMHFNC SPKLFGDWEA QVRRIMKLIA GGGLSITGSH NMCGDYLYSG HTVMLTLTYL 300
  301 FIKEYSPRRL WWYHWICWLL SVVGIFCILL AHDHYTVDVV VAYYITTRLF WWYHTMANQQ 360
  361 VLKEASQMNL LARVWWYRPF QYFEKNVQGI VPRSYHWPLP WPVVHLSRQV KYSRLVNDT

Type	Start	End	Confidence
Cytoplasmic	1	140	0.99
Transmembrane Helix	141	163	0.89
Non-Cytoplasmic	164	187	0.93
Transmembrane Helix	188	210	0.92
Cytoplasmic	211	220	0.85
Transmembrane Helix	221	241	0.81
Non-Cytoplasmic	242	281	0.86
Transmembrane Helix	282	302	0.80
Cytoplasmic	303	310	0.89
Transmembrane Helix	311	332	0.93
Non-Cytoplasmic	333	339	0.73
Transmembrane Helix	340	355	0.62
Cytoplasmic	356	419	0.68