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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SEM3D_DANRE
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAGEPDRR RQRRQVRTGR FSCAWWSTSV MLFFSLPEGN CMKESLPRVK LGYKDLIHSR  60
   61 SVVPFTGSSE GQHFQTVLLD EERSRLLLGA KDHVYLLDPD NINKHPKKLS WPASRDRVEM 120
  121 CILAGKNPLT ECANFIRVLH SYNRTHVYAC GTGAFHPTCA FLEIKGHKED RWLLLHSNTM 180
  181 ESGRMKCPFD PNQPFASVLT DQYLYAGTAS DFLGKDSTFT RSLGPPPHQQ YIRTDISEDY 240
  241 WINEGKFISA HPISDTYNPD DDKIYFFFRE ASRDGSTTDK SVLSRVARIC RNDVGGLRSL 300
  301 TNKWTTFLKA RLVCSIPGPD GVDTHFDELQ DIFLLPSRDE KNPMVYGVFT TTSSIFKGSA 360
  361 VCVYTMEDIR AAFNGPYAHK EGPDHRWVEY EGRIPYPRPG TCPSRTYDPH IKTTKDFPDE 420
  421 VISFIRLHPL MYQSVHPMTG RPIFTRINTE YRLTQIIVDR VAAEDGQYAV MFLGTDMGSV 480
  481 LKVVSITQEN WSSEEIILEE LQVFKNPSPI LNMEVSSKQQ QLFVGGSDGL VQVSLHRCQI 540
  541 YGQGCAECCL ARDPYCAWDG TQCSRYIPAS KRRARRQDIK HGDPSSHCWD TEDVLGRNVE 600
  601 EKVLYGVESN SSFLECVSKS QQALIRWFVL KPGVDHRQEI KPDERVLITD RGLLIRWLQR 660
  661 GDAGSYFCTS QEHRFTRTLL HVSLHILDRG QINAHQPAIR ESSENPAVTE PRQRYKDYLR 720
  721 MLSGPARSLD EYCETMWHRE KKQKQKGKWK HVQELRKSRN RRHH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle