YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A1_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.55
Transmembrane Helix	26	49	0.84
Cytoplasmic	50	64	0.47
Transmembrane Helix	65	97	0.70
Non-Cytoplasmic	98	104	0.64
Transmembrane Helix	105	126	0.88
Cytoplasmic	127	140	0.89
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	176	0.61
Transmembrane Helix	177	198	0.86
Cytoplasmic	199	205	0.61
Transmembrane Helix	206	224	0.90
Non-Cytoplasmic	225	273	0.92
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.85
Transmembrane Helix	312	331	0.90
Non-Cytoplasmic	332	382	0.91
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.91
Transmembrane Helix	423	444	0.91
Non-Cytoplasmic	445	455	0.85
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.91
Transmembrane Helix	526	548	0.93
Cytoplasmic	549	637	0.99
Transmembrane Helix	638	660	0.86
Non-Cytoplasmic	661	662	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTLSPLT TSTAAPLESY ERIRNAADIS VIVIYFLVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAASGIATGG FEWNALIMVV VLGWVFVPIY 120
  121 IRAGVVTMPE YLQKRFGGKR IQIYLSILSL LLYIFTKISA DIFSGAIFIQ LTLGLDIYVA 180
  181 IIILLVITGL YTITGGLAAV IYTDTLQTAI MMVGSVILTG FAFHEVGGYE AFTEKYMRAI 240
  241 PSQISYGNTS IPQKCYTPRE DAFHIFRDAI TGDIPWPGLV FGMSILTLWY WCTDQVIVQR 300
  301 CLSAKNLSHV KAGCILCGYL KVMPMFLIVM MGMVSRILYT DKVACVVPSE CERYCGTRVG 360
  361 CTNIAFPTLV VELMPNGLRG LMLSVMMASL MSSLTSIFNS ASTLFTMDIY TKIRKKASEK 420
  421 ELMIAGRLFM LFLIGISIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFWKRV 480
  481 NEPGAFWGLV LGFLIGISRM ITEFAYGTGS CMEPSNCPTI ICGVHYLYFA IILFVISIIT 540
  541 VVVVSLFTKP IPDVHLYRLC WSLRNSKEER IDLDAGEEDI QEAPEEATDT EVPKKKKGFF 600
  601 RRAYDLFCGL DQDKGPKMTK EEEAAMKLKL TDTSEHPLWR TVVNINGVIL LAVAVFCYAY 660
  661 FA