YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIAH2_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPSSAGGA AGGLGAGKAG GSKHGGSGGT TASAAAAAAA AAAAAAAAAA AAGVSGSVAG  60
   61 SGTVPAAAVA LPVAALPGQS PELTALFECP VCFDYVLPPI LQCQAGHLVC NQCRQKLSCC 120
  121 PTCRGPLTPS IRNLAMEKVA STLPFPCKYS SAGCLLSLHH SEKPEHEEVC EFRPYTCPCP 180
  181 GASCKWQGSL EEVMPHLMHA HKSITTLQGE DIVFLATDIN LPGAVDWVMM QSCFGHHFML 240
  241 VLEKQEKYEG HQQFFAIVLL IGTRKQAENF AYRLELNGNR RRLTWEATPR SIHDGVAAAI 300
  301 MNSDCLVFDT SIAHLFADNG NLGINVTISM C

Type	Start	End	Confidence
Signal Peptide	1	51	0.93
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	331	0.98