YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|437283, gi\|627167
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKQKISVE PLLLVAILIG VLVAATHAQD QKSVKPSAAR HPAAASRPHD EIYIDDDSIE  60
   61 GSGGRGGIHE DLEKDPDYSG SGFGPDDEDA EPDQHSHSSH NTRISQSSNS GINTAHTPTQ 120
  121 TSSTIPTTST STPMPTTTPA STTTAAATQI SSFANSSSTT TTTTLAPTIP AEPQQPLFPP 180
  181 FDKDLDTESS GDGIDADAED DDEDDGDDKD YDYNKELDKE IDIDGPEPGH LPPVVHHNTV 240
  241 ETGHIPTTDE IDVDGGDEDD NGDSDIDGPR IGGNDGDITE RGPGAGGSNV HELDPNTNVN 300
  301 SQPSDTKGID HRPNGNEVVI MSEDDRTSSF FSQPGILAAV IGGAVVGLLC AILVVMFIVY 360
  361 RMRKKDEGSY ALDEPKRSPA NNSYAKNANN REFYA

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	335	0.99
Transmembrane Helix	336	359	0.94
Cytoplasmic	360	395	0.99