YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SDC2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRAWILLTL GLMACVSAET RAELTSDKDM YLDSSSIEEA SGLYPIDDDD YSSASGSGAY  60
   61 EDKGSPDLTT SQLIPRISLT SAAPEVETMT LKTQSITPTQ TESPEETDKK EFEISEAEEK 120
  121 QDPAVKSTDV YTEKHSDNLF KRTEVLAAVI AGGVIGFLFA IFLILLLVYR MRKKDEGSYD 180
  181 LGERKPSSAA YQKAPTKEFY A

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	145	0.98
Transmembrane Helix	146	168	0.95
Cytoplasmic	169	201	0.98