YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SBMA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSFFPKPG TFFLSAFVWA LIAVIFWQAG GGDWVARITG ASGQIPISAA RFWSLDFLIF  60
   61 YAYYIVCVGL FALFWFIYSP HRWQYWSILG TALIIFVTWF LVEVGVAVNA WYAPFYDLIQ 120
  121 TALSSPHKVT IEQFYREVGV FLGIALIAVV ISVLNNFFVS HYVFRWRTAM NEYYMANWQQ 180
  181 LRHIEGAAQR VQEDTMRFAS TLENMGVSFI NAIMTLIAFL PVLVTLSAHV PELPIIGHIP 240
  241 YGLVIAAIVW SLMGTGLLAV VGIKLPGLEF KNQRVEAAYR KELVYGEDDA TRATPPTVRE 300
  301 LFSAVRKNYF RLYFHYMYFN IARILYLQVD NVFGLFLLFP SIVAGTITLG LMTQITNVFG 360
  361 QVRGAFQYLI NSWTTLVELM SIYKRLRSFE HELDGDKIQE VTHTLS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	56	0.93
Transmembrane Helix	57	78	0.92
Cytoplasmic	79	85	0.86
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	139	0.90
Transmembrane Helix	140	160	0.93
Cytoplasmic	161	205	0.95
Transmembrane Helix	206	228	0.91
Non-Cytoplasmic	229	240	0.79
Transmembrane Helix	241	263	0.90
Cytoplasmic	264	331	0.85
Transmembrane Helix	332	353	0.87
Non-Cytoplasmic	354	363	0.53
Transmembrane Helix	364	383	0.43
Cytoplasmic	384	406	0.75