YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAPC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYDSVYSEK RPPGTLRTAW RKFYSDASAM VGLYGCAGLA VLCIFGGWFA PYGIDQQFLG  60
   61 YQLLPPSWSR YGEVSFFLGT DDLGRDVLSR LLSGAAPTVG GAFVVTLAAT ICGLVLGTFA 120
  121 GATHGLRSAV LNHILDTLLA IPSLLLAIIV VAFAGPSLSH AMFAVWLALL PRMVRSIYSM 180
  181 VHDELEKEYV IAARLDGAST LNILWFAVMP NITAGLVTEI TRALSMAILD IAALGFLDLG 240
  241 AQLPSPEWGA MLGDALELIY VAPWTVMLPG AAIMISVLLV NLLGDGVRRA IIAGVE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	50	0.96
Non-Cytoplasmic	51	98	0.92
Transmembrane Helix	99	122	0.88
Cytoplasmic	123	136	0.73
Transmembrane Helix	137	164	0.79
Non-Cytoplasmic	165	197	0.66
Transmembrane Helix	198	217	0.71
Cytoplasmic	218	222	0.59
Transmembrane Helix	223	243	0.77
Non-Cytoplasmic	244	260	0.84
Transmembrane Helix	261	283	0.91
Cytoplasmic	284	296	0.90