YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	63	0.86
Non-Cytoplasmic	64	74	0.72
Transmembrane Helix	75	97	0.86
Cytoplasmic	98	113	0.78
Transmembrane Helix	114	142	0.79
Non-Cytoplasmic	143	212	0.93
Transmembrane Helix	213	233	0.95
Cytoplasmic	234	241	0.83
Transmembrane Helix	242	264	0.88
Non-Cytoplasmic	265	290	0.87
Transmembrane Helix	291	312	0.90
Cytoplasmic	313	323	0.78
Transmembrane Helix	324	346	0.92
Non-Cytoplasmic	347	379	0.86
Transmembrane Helix	380	404	0.74
Cytoplasmic	405	423	0.94
Transmembrane Helix	424	443	0.92
Non-Cytoplasmic	444	457	0.72
Transmembrane Helix	458	479	0.94
Cytoplasmic	480	495	0.97
Transmembrane Helix	496	519	0.89
Non-Cytoplasmic	520	536	0.91
Transmembrane Helix	537	559	0.93
Cytoplasmic	560	637	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLQEAHLR KPVTPDLLMT PSDQGDVDLD VDFAADRGNW TGKLDFLLSC IGYCVGLGNV  60
   61 WRFPYRAYTN GGGAFLVPYF LMLAICGIPL FFLELSLGQF SSLGPLAVWK ISPLFKGAGA 120
  121 AMLLIVGLVA IYYNMIIAYV LFYLFASLTS NLPWEHCGNW WNTERCLEHR GPKDGNGALP 180
  181 LNLSSTVSPS EEYWSRYVLH IQGSQGIGRP GEIRWNLCLC LLLAWVIVFL CILKGVKSSG 240
  241 KVVYFTATFP YLILLMLLVR GVTLPGAWKG IQFYLTPQFH HLLSSKVWIE AALQIFYSLG 300
  301 VGFGGLLTFA SYNTFHQNIY RDTFIVTLGN AITSILAGFA IFSVLGYMSQ ELGVPVDQVA 360
  361 KAGPGLAFVI YPQAMTMLPL SPFWSFLFFF MLLTLGLDSQ FAFLETIVTA VTDEFPYYLR 420
  421 PKKAVFSGLI CVAMYLMGLI LTTDGGMYWL VLLDDYSASF GLMVVVITTC LAVTRVYGIQ 480
  481 RFCRDIHMML GFKPGLYFRA CWLFLSPATL LALLVYSIVK YQPSEYGSYR FPAWAELLGI 540
  541 LMGLLSCLMI PAGMLVAVLR EEGSLWERLQ QASRPAIDWG PSLEENRTGM YVATLAGSQS 600
  601 PKPLMVHMRK YGGITSFENT AIEVDREIAE EEEESMM