YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A4_MACMU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.93
Transmembrane Helix	86	107	0.81
Non-Cytoplasmic	108	116	0.79
Transmembrane Helix	117	135	0.95
Cytoplasmic	136	154	0.86
Transmembrane Helix	155	179	0.82
Non-Cytoplasmic	180	249	0.96
Transmembrane Helix	250	271	0.93
Cytoplasmic	272	279	0.91
Transmembrane Helix	280	302	0.90
Non-Cytoplasmic	303	328	0.89
Transmembrane Helix	329	350	0.91
Cytoplasmic	351	360	0.87
Transmembrane Helix	361	384	0.88
Non-Cytoplasmic	385	418	0.87
Transmembrane Helix	419	443	0.76
Cytoplasmic	444	463	0.92
Transmembrane Helix	464	487	0.93
Non-Cytoplasmic	488	495	0.86
Transmembrane Helix	496	518	0.91
Cytoplasmic	519	534	0.94
Transmembrane Helix	535	559	0.88
Non-Cytoplasmic	560	574	0.88
Transmembrane Helix	575	595	0.95
Cytoplasmic	596	630	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTPLNSQK QLSACKDGED CQENGVLQKV VPTPGDKVES GQISNGYSAV PSPGAGDDTR  60
   61 HSIPAATTTL VAELHQGERE TWGKKVDFLL SVIGYAVDLG NVWRFPYICY QNGGGAFLIP 120
  121 YTIMAIFGGI PLFYMELALG QYHRNGCISI WRKICPIFKG IGYAICIIAF YIASYYNTIM 180
  181 AWALYYLISS FTDQLPWTSC KNSWNTGNCT NYFSEDNITW TLHSTSPAEE FYTRHVLQIH 240
  241 RSKGLQDLGG ISWQLALCIM LIFTVIYFSI WKGVKTSGKV VWVTATFPYI ILSVLLVRGA 300
  301 TLPGAWRGVL FYLKPNWQKL LETGVWIDAA AQIFFSLGPG FGVLLAFASY NKFNNNCYQD 360
  361 ALVTSVVNCM TSFVSGFVIF TVLGYMAEMR NEDVSEVAKD AGPSLLFITY AEAIANMPAS 420
  421 TFFAIIFFLM LITLGLDSTF AGLEGVITAV LDEFPHIWAK RREWFVLAVV ITCFFGSLVT 480
  481 LTFGGAYVVK LLEEYATGPA VLTVALIEAV AVSWFYGITQ FCRDVKEMLG FSPGWFWRIC 540
  541 WVAISPLFLL FIICSFLMSP PQLRLFQYNY PHWSIILGYC IGTSSFVCIP TYIAYRLIST 600
  601 PGTFKERIIK SITPETPTEI PCGDVRLNAV