YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A3_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.96
Transmembrane Helix	69	88	0.90
Non-Cytoplasmic	89	97	0.81
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	139	0.88
Transmembrane Helix	140	163	0.87
Non-Cytoplasmic	164	234	0.96
Transmembrane Helix	235	253	0.97
Cytoplasmic	254	261	0.88
Transmembrane Helix	262	284	0.87
Non-Cytoplasmic	285	310	0.87
Transmembrane Helix	311	332	0.90
Cytoplasmic	333	343	0.89
Transmembrane Helix	344	367	0.86
Non-Cytoplasmic	368	394	0.91
Transmembrane Helix	395	417	0.84
Cytoplasmic	418	443	0.90
Transmembrane Helix	444	467	0.92
Non-Cytoplasmic	468	475	0.77
Transmembrane Helix	476	498	0.94
Cytoplasmic	499	518	0.94
Transmembrane Helix	519	540	0.95
Non-Cytoplasmic	541	555	0.87
Transmembrane Helix	556	575	0.95
Cytoplasmic	576	693	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGRCSVAH MSSVVAPAKE ANAMGPKAVE LVLVKEQNGV QLTNSTLLNP PQSPTEAQDR  60
   61 ETWSKKADFL LSVIGFAVDL ANVWRFPYLC YKNGGGAFLV PYLFFMVVAG VPLFYMELAL 120
  121 GQFNREGAAG VWKICPILRG VGYTAILISL YIGFFYNVII AWALHYLLSS FTTELPWTHC 180
  181 NHSWNSPRCS DARAPNASSG PNGTSRTTPA AEYFERGVLH LHESQGIDDL GPPRWQLTSC 240
  241 LVLVIVLLYF SLWKGVKTSG KVVWITATMP YVVLFALLLR GITLPGAVDA IRAYLSVDFH 300
  301 RLCEASVWID AAIQICFSLG VGLGVLIAFS SYNKFTNNCY RDAIITTSVN SLTSFSSGFV 360
  361 VFSFLGYMAQ KHSVPIGDVA KDGPGLIFII YPEALATLPL SSVWAVVFFV MLLTLGIDSA 420
  421 MGGMESVITG LADEFQLLHR HRELFTLLVV LATFLLSLFC VTNGGIYVFT LLDHFAAGTS 480
  481 ILFGVLMEVI GVAWFYGVWQ FSDDIKQMTG RRPSLYWRLC WKFVSPCFLL FVVVVSIATF 540
  541 RPPHYGAYVF PEWATALGWA IAASSMSVVP IYAAYKLCSL PGSSREKLAY AITPETEHGR 600
  601 VDSGGGAPVH APPLARGVGR WRKRKSCWVP SRGPGRGGPP TPSPRLAGHT RAFPWTGAPP 660
  661 VPRELTPPST CRCVPPLVCA HPAVESTGLC SVY