YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S5A2_PIG
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVRCQQSPV LAGSATLAAL GALALYFAEP SGYGKYTESL TPAAIRLPAR AAWFLQELPS  60
   61 FVVPAGILAG QPRSLFGPPA TVLLGLFCAH YFHRTFVYSL LTRGRPFPVV FLFRGFVFCM 120
  121 GNGLLQGYYL VYCAEYPAEW YTDIRFSLGV FLFILGMGIN IHSDYILRQL RKPGEVIYKI 180
  181 PQGGLFTYVS GANFLGEIIE WIGYALATWS LPALAFAFFS LCFLGLRAFH HHRFYVKMFE 240
  241 DYPKSRKALI PFIF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.62
Transmembrane Helix	9	28	0.73
Non-Cytoplasmic	29	74	0.79
Transmembrane Helix	75	93	0.91
Cytoplasmic	94	109	0.80
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	143	0.85
Transmembrane Helix	144	163	0.92
Cytoplasmic	164	179	0.78
Transmembrane Helix	180	199	0.84
Non-Cytoplasmic	200	208	0.56
Transmembrane Helix	209	229	0.91
Cytoplasmic	230	254	0.96