YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S5A1_MACFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVAEELL LAEERMLAAL AYLQCAVGCA VLARNRETNL AYGRHASPSF RVRVPARAAW  60
   61 VVQELPSLAL PLYQYASESA PRLRSAPNCI LLAMFLVHYG HRCLIYPFLM RGGKPMPLLA 120
  121 CTMAIMFCTF NGYLQSRYLS HWAVYADDWV TDPRFLIGFG LWLAGMLINI HSDHILRNLR 180
  181 KPGDTGYKIP RGGLFEYVTA ANYFGEIMEW CGYALASWSV QGAAFAFFTF CFLSGRAKEH 240
  241 HRWYLQKFEE YPKFRKILIP FLF

Type	Start	End	Confidence
Cytoplasmic	1	85	0.72
Transmembrane Helix	86	105	0.69
Non-Cytoplasmic	106	114	0.39
Transmembrane Helix	115	134	0.93
Cytoplasmic	135	154	0.45
Transmembrane Helix	155	175	0.84
Non-Cytoplasmic	176	213	0.58
Transmembrane Helix	214	233	0.91
Cytoplasmic	234	263	0.89