YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S40A1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	38	0.80
Non-Cytoplasmic	39	54	0.76
Transmembrane Helix	55	77	0.90
Cytoplasmic	78	92	0.75
Transmembrane Helix	93	113	0.90
Non-Cytoplasmic	114	122	0.78
Transmembrane Helix	123	145	0.82
Cytoplasmic	146	175	0.75
Transmembrane Helix	176	195	0.70
Non-Cytoplasmic	196	198	0.45
Transmembrane Helix	199	221	0.76
Cytoplasmic	222	294	0.97
Transmembrane Helix	295	316	0.82
Non-Cytoplasmic	317	334	0.74
Transmembrane Helix	335	357	0.93
Cytoplasmic	358	365	0.88
Transmembrane Helix	366	387	0.92
Non-Cytoplasmic	388	442	0.94
Transmembrane Helix	443	461	0.84
Cytoplasmic	462	481	0.76
Transmembrane Helix	482	504	0.66
Non-Cytoplasmic	505	509	0.71
Transmembrane Helix	510	530	0.93
Cytoplasmic	531	562	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPASKKPR CERFREFFKS AKFLIYVGHA LSTWGDRMWN FAVAVFLVEL YGNSLLLTAV  60
   61 YGLVVAGSVL LLGAIIGDWV DKNPRLKVAQ TSLVVQNSAV ILCGALLMAV FQFKQQLSSM 120
  121 YDGWLLTTCY IMVISIANIA NLASTAMSIT IQRDWVVVVA GDDRSKLADM NATVRIIDQL 180
  181 TNILAPMLVG QIMAFGSHFI GCGFISGWNL FSMCLEYFLL WKVYQKTPAL AFKAGQKDSD 240
  241 DQELKHLNIQ KEIGNTESPV EASQLMTESS EPKKDTGCCY QMAEPIRTFK DGWVAYYNQS 300
  301 IFFAGMSLAF LYMTVLGFDC ITTGYAYTQG LNGSVLSLLM GASAVSGICG TVAFTWIRKK 360
  361 CGLIRTGFIA GVTQLSCLTL CVASVFAPGS PFDLSVSPFE EVLRHLFGDS GSLRESPTFI 420
  421 PTTEPPIQAN VTVFEEAPPV ESYMSVGLLF AGVIAARVGL WSFDLTVTQL IQENVIESER 480
  481 GVINGVQNSM NYLLDLLHFI MVILAPNPEA FGLLVIISVS FVAMGHMMYF RFAYKSLGSR 540
  541 LFLFCSPEQK PDPNIPSLPN SV