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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: S12A3_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELPVTEMP GDALCSGRFT ISTLLGGDEP PPAACDNSQP SHLTHGSTLY LRTFGYNTID  60
   61 VVPAYEHYAN SALPGEPRKV RPTLADLHSF LKQEGSHLHA LAFDGRPGHE LTDGLVEDET 120
  121 GANSEKSPGE PVRFGWVKGV MIRCMLNIWG VILYLRLPWI TAQAGIVLTW LIILLSVMVT 180
  181 SITGLSISAI STNGKVKSGG TYFLISRSLG PELGGSIGLI FAFANAVGVA MHTVGFAETV 240
  241 RDLLQENGTP IVDPINDIRI IGVVTVTVLL AISLAGMEWE SKAQVLFFLV IMVSFANYLV 300
  301 GTLIPASKDK ASKGFYSYHG DIFVQNLVPD WRGIDGSFFG MFSIFFPSAT GILAGANISG 360
  361 DLKDPAVAIP KGTLMAIFWT TISYLAISAT IGSCVVRDAS GDVNDTITPG PGLCEGLACG 420
  421 YGWNFTECSQ QHSCRYGLIN YYQTMSMVSA FAPLITAGIF GATLSSALAC LVSAAKVFQC 480
  481 LCEDQLYPLI GFFGKGYGKN KEPVRGYLLA YAIAVAFIII AELNTIAPII SNFFLCSYAL 540
  541 INFSCFHASI TNSPGWRPSF RYYSKWAALF GAVISVVIMF LLTWWAALIA IGVVLFLLLY 600
  601 VIYKKPEVNW GSSVQAGSYN LALSYSVGLN EVEDHIKNYR PQCLVLTGPP NFRPALVDFV 660
  661 STFTQNLSLM ICGHVLIAPG KQRVPELRLI ASGHTKWLNK RKIKAFYSDV IAEDLRSGVQ 720
  721 ILMQASGLGR MKPNILVVGF KKNWQSAHPA TLEDYIGILH DAFDFNYGVC IMRMREGLNV 780
  781 SEALQTHTAP EALVQEEQTS TIFQSEQGKK TIDIYWLFDD GGLTLLIPYL LHRKKRWGKC 840
  841 KIRVFVGGQI NRMDEERKAI ISLLSKFRLG FHEVHVLPDI NQKPQVEHTK RFEDMIAPFR 900
  901 LNDGFKDEAT VAEMRRDYPW KISDEEINKN RIKSLRQVRL NEILLDYSRD AALIILTLPI 960
  961 GRKGKCPSSL YMAWLETLSQ DLSPPVLLIR GNQENVLTFY CQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle