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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: S12A2_SQUAC
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAFPASSA GVQSQSGPEP GAGQQEPPPP ATPLRPVASQ SRFQVDLVTE GGGGGDGQKG  60
   61 QTAAQPAAAA KDKDRGDGGA AAPSPASPAA AAEPPAAAAE EAKGRFRVNF VDPASDEPPL 120
  121 SSQQQPPPPS SASSAHGGHQ PPSESMNGYP QNGDTMMSEG SLHSSGTGAH HYYDTHTNTY 180
  181 YLRTFGHNTI DAVPRIDHYR HTVAQLGEKL IRPSLAELHD ELDKEPFEDG YVNGEESSPA 240
  241 EEAVSKHVAD NKGVVKFGWI KGVLVRCMLN IWGVMLFIRL SWIVGHAGIG LALLVIGTAT 300
  301 VVTTITGLST SAITTNGFVR GGGAYYLISR SLGPEFGGAI GLIFAFANAV AVAMYVVGFA 360
  361 ETVRDLLVEH NALMIDEMSD IRIIGSVTIV VLFGISVAGM EWEAKAQIVL LGILLLAIVN 420
  421 FTVGTFIPAN DKRAKGFFNY RGEIFSENFV PDFRDGEDFF SVFAIFFPAA TGILAGANIS 480
  481 GDLADPQLAI PKGTLLAILI TTIVYAGAAV SVGSCIVREA TGNLTDAIIP GTVTNCTNVA 540
  541 CKLGFNFSSC ATNKCSYGLM NDFQVMSLVS GFGPLITAGI FSATLSSALA SLVSAPKIFQ 600
  601 ALCKDNIYPG LHVFSVGYGK NNEPLRGYVL TFFIGLGFIL IAELNVIAPI ISNFFLASYA 660
  661 LINFSVFHAS LAKSPGWRPA FRFYNMWISL IGAILCCGVM FVINWWAALL TNVIVLALYI 720
  721 YVTYKKPDVN WGSSTQALTY LNALQHAIRL TGVEDHVKNF RPQCLLMTGA PTSRPALLHL 780
  781 VHAFTKNVGL VVCGHVHTGP RRQALKEIST DQAKYQRWLI KNKMKAFYAP VYAEDLREGT 840
  841 QFLLQAVGLG RMRPNTLVFG FKKDWRQALM KDVENYINAI HDAFDYQYGV VVIRLKEGFN 900
  901 ISHLQAQEEL CTSQEKSAHP KDIVVNLEHS DADSSKPSSK SVSETNSPAV CQDQKDEEDD 960
  961 GKASTQPLLK KEVKDPSVPL NMTDQKLLQA SSQFQKKQGK GTIDVWWLFD DGGLTLLIPY1020
 1021 LLTTKKKWKD CKIRVFIGGK INRIDHDRRT MATLLSKFRI DFSDITVLGD MNTKPSKDNI1080
 1081 TAFEEMIEPF RLHEDDKEQE ASEKMKEEEP WRITDNELEI YRMKTYRQIR LNELLRENSG1140
 1141 TANLIVMSLP VARKGAVSSA LYMAWIETLS KDLPPILLVR GNHQSVLTFY S

YRC Informatics Platform - Version 3.0
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