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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RYR1_PIG
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGGEGEDE VQFLRTDDEV VLQCNATVLK EQLKLCLAAE GFGNRLCFLE PTSNAQNVPP  60
   61 DLAICCFVLE QSLSVRALQE MLANTVEAGV ESSQGGGHRT LLYGHAILLR HAHSGMYLSC 120
  121 LTTSRSMTDK LAFDVGLQED ATGEACWWTT HPASKQRSEG EKVRVGDDLI LVSVSSERYL 180
  181 HLSTASGELQ VDASFMQTLW NMNPICSGCE EGYVTGGHVL RLFHGHMDEC LTISPADSDD 240
  241 QRRLVYYEGG SVCTHARSLW RLEPLRISWS GSHLRWGQPL RIRHVTTGRY LALIEDQGLV 300
  301 VVDASKAHTK ATSFCFRISK EKLDTAPKRD VEGMGPPEIK YGESLCFVQH VASGLWLTYA 360
  361 APDPKALRLG VLKKKAILHQ EGHMDDALSL TRCQQEESQA ARMIYSTAGL YNHFIKGLDS 420
  421 FSGKPRGSGA PAGTALPLEG VILSLQDLIG YFEPPSEELQ HEEKQSKLRS LRNRQSLFQE 480
  481 EGMLSLVLNC IDRLNVYTTA AHFAEFAGEE AAESWKEIVN LLYEILASLI RGNRANCALF 540
  541 SNNLDWLVSK LDRLEASSGI LEVLYCVLIE SPEVLNIIQE NHIKSIISLL DKHGRNHKVL 600
  601 DVLCSLCVCN GVAVRSNQDL ITENLLPGRE LLLQTNLINY VTSIRPNIFV GRAEGTTQYS 660
  661 KWYFEVMVDE VVPFLTAQAT HLRVGWALTE GYSPYPGGGE GWGGNGVGDD LYSYGFDGLH 720
  721 LWTGHVPRLV TSPGQHLLAP EDVVSCCLDL SVPSISFRIN GCPVQGVFEA FNLNGLFFPV 780
  781 VSFSAGVKVR FLLGGRHGEF KFLPPPGYAP CHEAVLPRER LRLEPIKEYR REGPRGPHLV 840
  841 GPSRCLSHTD FVPCPVDTVQ IVLPPHLERI REKLAENIHE LWALTRIEQG WTYGPVRDDN 900
  901 KRLHPCLVDF HSLPEPERNY NLQMSGETLK TLLALGCHVG MADEKAEDNL RKTKLPKTYM 960
  961 MSNGYKPAPL DLSHVRLTPA QTTLVDRLAE NGHNVWARDR VAQGWSYSAV QDIPARRNPR1020
 1021 LVPYRLLDEA TKRSNRDSLC QAVRTLLGYG YNIEPPDQEP SQVESQSRWD RVRIFRAEKS1080
 1081 YAVQSGRWYF EFEAVTTGEM RVGWARPELR PDVELGADEL AYVFNGHRGQ RWHLGSELFG1140
 1141 RPWQSGDVVG CMIDLTENTI IFTLNGEVLM SDSGSETAFR DIEVGDGFLP VCSLGPGQVG1200
 1201 HLNLGQDVSS LRFFAICGLQ EGFEPFAINM QRPVTTWFSK SLPQFEAVPL EHPHYEVSRV1260
 1261 DGTVDTPPCL RLTHRTWGSQ NSLVEMLFLR LSLPVQFHQH FRCTAGATPL APPGLQPPAE1320
 1321 DEARAAEPDP DYENLRRSAG RWGEAEGGKE GTAKEGAPGG TAQAGVEAQP PRAENEKDAT1380
 1381 TEKNKKRGFL FKAKKAAMMT QPPATPTLPR LPHEVVPADD RDDPDIILNT TTYYYSVRVF1440
 1441 AGQEPSCVWV GWVTPDYHQH DMNFDLTKVR AVTVTMGDEQ GNIHSSLKCS NCYMVWGGDF1500
 1501 VSPGQQGRIS HTDLVIGCLV DLATGLMTFT ANGKESNTFF QVEPNTKLFP AVFVLPTHQN1560
 1561 VIQFELGKQK NIMPLSAAMF LSERKNPAPQ CPPRLEMQML MPVSWSRMPN HFLRVETRRA1620
 1621 GERLGWAVQC QEPLTMMALH IPEENRCMDI LELSERLDLQ QFHSHTLRLY RAVCALGNNR1680
 1681 VAHALCSHVD QAQLLHALED AHLPGPLRAG YYDLLISIHL ESACRSRRSM LSEYIVPLTP1740
 1741 ETRAITLFPP GKRTENGPRR HGLPGVGVTT SLRPPHHFSA PCFVAALPAV GAAEAPARLS1800
 1801 PSIPLEALRD KALRMLGEAV RDGGQHARDP VGGSVEFQFV PVLKLVSTLL VMGIFGDEDV1860
 1861 KQILKMIEPE VFTEEEEEEE EEEEEEEEDE EEKEEDEEEE AREKEDEEKE EEETAEGEKE1920
 1921 EYLEEGLLQM KLPESVKLQM CNLLEYFCDQ ELQHRVESLA AFAERYVDKL QANQRDRYGI1980
 1981 LMKAFTMTAA ETARRTREFR SPPQEQINML LHFKDGEDEE DCPLPDEIRQ DLLEFHQDLL2040
 2041 THCGIQLEGE EEEPEEEATL GSRLMSLLEK VRLVKKKEEK SEEEPPAEES KAQSLQELVS2100
 2101 HTVVRWAQED FVQSPELVRA MFSLLHRQYD GLGELLRALP RAYTISPSSV EDTMSLLECL2160
 2161 GQIRSLLIVQ MGPQEENLMI QSIGNIMNNK VFYQHPNLMR ALGMHETVME VMVNVLGGGE2220
 2221 SKEIRFPKMV TSCCRFLCYF CRISRQNQRS MFDHLSYLLE NSGIGLGMQG STPLDVAAAS2280
 2281 VIDNNELALA LQEQDLEKVV SYLAGCGLQS CPMLLAKGYP DIGWNPCGGE RYLDFLRFAV2340
 2341 FVNGESVEEN ANVVVRLLIR KPECFGPALR GEGGSGLLAT IEEAIRISED PARDGPGVRR2400
 2401 DRRREHFGEE PPEENRVHLG HAIMSFYAAL IDLLGRCAPE MHLIQAGKGE ALRIRAILRS2460
 2461 LVPLDDLVGI ISLPLQIPTL GKDGALVQPK MSASFVPDHK ASMVLFLDRV YGIENQDFLL2520
 2521 HVLDVGFLPD MRAAASLDTA TFSTTEMALA LNRYLCLAVL PLITKCAPLF AGTEHRAIMV2580
 2581 DSMLHTVYRL SRGRSLTKAQ RDVIEECLMA LCRYIRPSML QHLLRRLVFD VPILNEFAKM2640
 2641 PLKLLTNHYE RCWKYYCLPT GWANFGVTSE EELHLTRKLF WGIFDSLAHK KYDPELYRMA2700
 2701 MPCLCAIAGA LPPDYVDASY SSKAEKKATV DAEGNFDPRP VETLNVIIPE KLDSFINKFA2760
 2761 EYTHEKWAFD KIQNNWSYGE NIDEELKTHP MLRPYKTFSE KDKEIYRWPI KESLKAMIAW2820
 2821 EWTIEKAREG EEEKTEKKKT RKISQSAQTY DAREGYNPQP PDLSGVTLSR ELQAMAEQLA2880
 2881 ENYHNTWGRK KKQELEAKGG GTHPLLVPYD TLTAKEKARD REKAQELLKF LQMNGYAVTR2940
 2941 GLKDMELDTS SIEKRFAFGF LQQLLRWMDI SQEFIAHLEA VVSSGRVEKS PHEQEIKFFA3000
 3001 KILLPLINQY FTNHCLYFLS TPAKVLGSGG HASNKEKEMI TSLFCKLAAL VRHRVSLFGT3060
 3061 DAPAVVNCLH ILARSLDART VMKSGPEIVK AGLRSFFESA SEDIEKMVEN LRLGKVSQAR3120
 3121 TQVKGVGQNL TYTTVALLPV LTTLFQHIAQ HQFGDDVILD DVQVSCYRTL CSIYSLGTTR3180
 3181 NPYVEKLRPA LGECLARLAA AMPVAFLEPQ LNEYNACSVY TTKSPRERAI LGLPNSVEEM3240
 3241 CPDIPVLERL MADIGGLAES GARYTEMPHV IEITLPMLCS YLPRWWERGP EAPPPALPAG3300
 3301 APPPCTAVTS DHLNSLLGNI LRIIVNNLGI DEASWMKRLA VFAQPIVSRA RPELLHSHFI3360
 3361 PTIGRLRKRA GKVVAEEEQL RLEAKAEAEE GELLVRDEFS VLCRDLYALY PLLIRYVDNN3420
 3421 RAHWLTEPNP SAEELFRMVG EIFIYWSKSH NFKREEQNFV VQNEINNMSF LTADNKSKMA3480
 3481 KSGGSDQERT KKKRLGDRYS VQTSLIVATL KKMLPIGLNM CAPTDQELIT LAKTRYALKD3540
 3541 TDEEVREFLQ NNLHLQGKVE GSPSLRWQMA LYRGLPGREE DADDPEKIVR RVQEVSAVLY3600
 3601 HLEQMEHPYK SKKAVWHKLL SKQRRRAVVA CFRMTPLYNL PTHRACNMFL ESYKAAWILT3660
 3661 EDHSFEDRMI DDLSKAGEQE EEEEEVEEKK PDPLHQLVLH FSRTALTEKS KLDEDYLYMA3720
 3721 YADIMAKSCH LEEGGENGEA QEEVEVSFEE KEMEKQRLLY QQARLHNRGA AEMVLQMISA3780
 3781 CKGETGAMVS STLKLGISIL NGGNADVQQK MLDYLKDKKE VGFFQSIQAL MQTCSVLDLN3840
 3841 AFERQNKAEG LGMVNEDGTV INRQNGEKVM ADDEFTQDLF RFLQLLCEGH NNDFQNYLRT3900
 3901 QTGNTTTINI IICTVDYLLR LQESISDFYW YYSGKDVIEE QGKRNFSKAM SVAKQVFNSL3960
 3961 TEYIQGPCTG NQQSLAHSRL WDAVVGFLHV FAHMMMKLAQ DSSQIELLKE LLDLQKDMVV4020
 4021 MLLSLLEGNV VNGMIARQMV DMLVESSSNV EMILKFFDMF LKLKDIVGSE AFQDYVTDPR4080
 4081 GLISKKDFQK AMDSQKQFTG PEIQFLLSCS EADENEMIDC EEFANRFQEP ARDIGFNVAV4140
 4141 LLTNLSEHVP HDPRLRNFLE LAESILEYFR PYLGRIEIMG ASRRIERIYF EISETNRAQW4200
 4201 EMPQVKESKR QFIFDVVNEG GESEKMELFV SFCEDTIFEM QIAAQISEPE GEPEEDEDEG4260
 4261 AGLAEAGAEG AEEGAVGPEG AAGTAAAGLT ARLAAATSRA LRGLSYRSLR RRVRRLRRLT4320
 4321 AREAATALAA LLWAALAHAG AAGAGAAAGA LRLLWGSLFG GGLVEGAKKV TVTELLAGMP4380
 4381 DPTGDEVHGE QPAGPGGEAD GEGAGEGAGE AWEGAGDEEV AVQEAGPGGA DGAVAVAEGG4440
 4441 PFRPEGAGGL GDMGDTTPAE PPTPEGSPII KRKLGVDGEE EELPPEPEPE PEPEPEKADA4500
 4501 ENGEKEEVPK PPPEPPKKTA PPPPPPKKEE GGSGGLEFWG ELEVQRVKFL NYLSRNFYTL4560
 4561 RFLALFLAFA INFILLFYKV SDSPPGEDDM EGSAAGDLSG AGSGGGSGWG SGAGEEVEGD4620
 4621 EDENMVYYFL EESTGYMEPA LRCLSLLHTL VAFLCIIGYN CLKVPLVIFK REKELARKLE4680
 4681 FDGLYITEQP EDDDVKGQWD RLVLNTPSFP SNYWDKFVKR KVLDKHGDIY GRERIAELLG4740
 4741 MDLATLEITA HNERKPEPPP GLLTWLMSID VKYQIWKFGV IFTDNSFLYL GWYMVMSLLG4800
 4801 HYNNFFFAAH LLDIAMGVKT LRTILSSVTH NGKQLVMTVG LLAVVVYLYT VVAFNFFRKF4860
 4861 YNKSEDEDEP DMKCDDMMTC YLFHMYVGVR AGGGIGDEIE DPAGDEYELY RVVFDITFFF4920
 4921 FVIVILLAII QGLIIDAFGE LRDQQEQVRE DMETKCFICG IGSDYFDTTP HRFETHTLEE4980
 4981 HNLANYMFFL MYLINKDETE HTGQESYVWK MYQERCWDFF PAGDCFRKQY EDQLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle