YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2133112, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDSSGSEW ELYRYTPSKG AAIALTVLFI VTTLIYSLQV VWDARKASKP EVDNPFDTPV  60
   61 DKCESITAIS LGENYKKLTV RSTFSAFIPL FFGCIMEIVG YIARAVSSSN TKEIAPYVIQ 120
  121 AVLLLIAPAL YAATIYMLFG RLLHVMRCES LMIVSSRFGT SFFVFGDVVS FCLQAAGGGL 180
  181 MATVNGRTTG SNLITAGLVI QIVFFGVFII NEFRFSYSVA RVCPFYRHIS KKWWFLNLTL 240
  241 MLSSILIMVR SIVRLVEFVE GYDGFIISHE YFIYVFDAVP MLLAAIVFIV GSFFGNIFTT 300
  301 ITECQSLKP

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.94
Transmembrane Helix	20	40	0.93
Cytoplasmic	41	83	0.94
Transmembrane Helix	84	105	0.90
Non-Cytoplasmic	106	116	0.90
Transmembrane Helix	117	140	0.89
Cytoplasmic	141	157	0.87
Transmembrane Helix	158	182	0.84
Non-Cytoplasmic	183	192	0.83
Transmembrane Helix	193	213	0.93
Cytoplasmic	214	232	0.93
Transmembrane Helix	233	253	0.95
Non-Cytoplasmic	254	277	0.85
Transmembrane Helix	278	298	0.91
Cytoplasmic	299	309	0.85