YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RT09_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPCVSCGR VLSPWFTPAV RASLCQRPGY WTASAVGWQT GTRFQLSKLI HTTVVTTKKN  60
   61 VQASRQESYT EDFIKKQIEE FNIGKRHLAN MMGEDPETFA EEDIDRAIAY LFPSGLFEKR 120
  121 ARPMMKHPEH IFPKQRATQW GEDGRPFHFL FYTGKQSYYS LMHDVYGKVM QLEKHRGPLS 180
  181 ASAESRDLIG SRWLIKEELE EMLVETLSDE DYAQFIRLLE KLLTLPCGPA EEEFVQRFRR 240
  241 SVTIQSKKQL IEPVQYDEQG MAFSTSEGRR KSATAQAVVY EHGSGKIHVN GVDYLIYFPI 300
  301 TQDREQLMFP FHFLDRLERH DVTCTVSGGG RSAQAGAIRL AMARALCSFV TEDEVEWMRQ 360
  361 AGLLTPDPRI RERKKPGQEG ARRKFTWKKR

Type	Start	End	Confidence
Signal Peptide	1	22	0.65
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	390	0.99