YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RNFE_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENKQLMKN GMWSNNPALV QLLGLCPLLA VSSTITNALG LGIATLLVLV GSNVTVSLIR  60
   61 NYVPKEIRIP VFVMIIASLV TCVQLLMNAY AYGLYLSLGI FIPLIVTNCI IIGRAEAYAS 120
  121 KNDVLPAALD GLWMGLGMTS VLVVLGSMRE LIGNGTLFDG ADLLLGDWAA ALRIQVFQFD 180
  181 SSFLLALLPP GAFIGVGLLI ALKNVIDSSI QARQPKEEKP AIERARVTNA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	31	0.87
Non-Cytoplasmic	32	37	0.63
Transmembrane Helix	38	59	0.88
Cytoplasmic	60	68	0.78
Transmembrane Helix	69	87	0.95
Non-Cytoplasmic	88	93	0.66
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	128	0.76
Transmembrane Helix	129	148	0.90
Non-Cytoplasmic	149	182	0.87
Transmembrane Helix	183	206	0.87
Cytoplasmic	207	230	0.95