YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RNFE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIKDVIVQ GLWKNNSALV QLLGLCPLLA VTSTATNALG LGLATTLVLT LTNLTISTLR  60
   61 HWTPAEIRIP IYVMIIASVV SAVQMLINAY AFGLYQSLGI FIPLIVTNCI VVGRAEAFAA 120
  121 KKGPALSALD GFSIGMGATC AMFVLGSLRE IIGNGTLFDG ADALLGSWAK VLRVEIFHTD 180
  181 SPFLLAMLPP GAFIGLGLML AGKYLIDERM KKRRAEAAAE RALPNGETGN V

Type	Start	End	Confidence
Cytoplasmic	1	11	0.76
Transmembrane Helix	12	31	0.74
Non-Cytoplasmic	32	37	0.55
Transmembrane Helix	38	59	0.83
Cytoplasmic	60	68	0.82
Transmembrane Helix	69	87	0.94
Non-Cytoplasmic	88	96	0.55
Transmembrane Helix	97	118	0.85
Cytoplasmic	119	125	0.92
Transmembrane Helix	126	148	0.88
Non-Cytoplasmic	149	183	0.93
Transmembrane Helix	184	206	0.92
Cytoplasmic	207	231	0.99