YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMLA1_SHIFL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRKGIILA GGSGTRLYPV TMAVSKQLLP IYDKPMIYYP LSTLMLAGIR DILIISTPQD  60
   61 TPRFQQLLGD GSQWGLNLQY KVQPSPDGLA QAFIIGEEFI GGDDCALVLG DNIFYGHDLP 120
  121 KLMDTAVNRE SGATVFAYHV NDPERYGVVE FDDNGTAISL EEKPQEPKSN YAVTGLYFYD 180
  181 NDVVEMAKNL KPSARGELEI TDINRIYMDQ GRLSVAMMGR GYAWLDTGTH QSLIEASNFI 240
  241 ATIEERQGLK VSCPEEIAHR KGFIDAEQVK VLAEPLKKNA YGQYLLKMIK GY

Type	Start	End	Confidence
Signal Peptide	1	23	0.51
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	292	0.97