YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45435800, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEWLWVGI ASVLLSACID QPPAPQQQVQ QTYSGPVEEI GGAEPRYEPF NPNVNQDYKV  60
   61 NGQSYRIIKD PQNFSQIGLA SSYGEEARGN TTATGEIFDP NALTAAHPTL PIPSYVRVTN 120
  121 VSNGRQIVVR VNDRGPYTPG RVIDLSRAAA DRLNISNNTK VKIDFINVAP DGSLSGPGMV 180
  181 GTTIAKQSYA LPSRPDLTSS GMGTPMQQDA PATGAAVQAI DNSQLSGTDA TQPVASQSSG 240
  241 FLRAPTPVPA GVLESSEPVI DSAPVTPPVV ANPGPVTTTP TSSAISGGYV VQVGALSDAQ 300
  301 RAQSWQQSLS QRFGVPGKVS NSGSIYRVQL GPFSHRQQAV DLQQRLSNEA QQQSFIVAAP 360
  361

Type	Start	End	Confidence
Signal Peptide	1	26	0.81
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	360	0.99