YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RLA0_ICTPU
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPREDRATWK SNYFLKIIQL LNDYPKCFIV GADNVGSKQM QTIRLSLRGK AIVLMGKNTM  60
   61 MRKAIRGHLE NNPALEKLLP HIRGNVGFVF TKEDLPEVRD MLLANKVPAA ARAGAIAPCE 120
  121 VTVPAQNTGL GPEKTSFFQA LGITTKISRG TIEILSDVQL IRPGDKVGAS EATLLNMLNI 180
  181 SPFSYGLIIQ QVYDNGSVYS PEVLDITEDA LHKRFLEGVR NIASVCLQIG YPTLASIPHS 240
  241 IINGYKRVLR VAVETDYSFP MADKVKAFLA DPSRFAVAAA PSVAAAPAAV RLVPLLSRPR 300
  301 RSPRSLMRTW LRPVRLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	276	0.82
Transmembrane Helix	277	297	0.58
Cytoplasmic	298	317	0.57