YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIR2_SPISO
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSINTTRKE NELSGNLGKM KITEENKPKK VLGEITNFQR STQKTPLKQE IKPVVKKSQQ  60
   61 VEPLLADNPR RFVVLPIQYH DIWKMYKKAE ASFWTAEEVD LSKDMAHWES LKKEEKHFIS 120
  121 HVLAFFAASD GIVNENLVER FSKEVQVTEA RCFYGFQIAM ENIHSEMYSL LIDTYIKDPQ 180
  181 ERDFLFNAIE TMPCVKEKAD WAMRWINDDS SSYAERVVAF AAVEGIFFSG SFASIFWLKK 240
  241 RGIMPGLTFS NELISRDEGL HCDFACLMFS HLVNKPSQER IHQIIDEAVK IEQVFLTEAL 300
  301 PCRLIGMNCD LMRQYIEFVA DRLLLELKCD KLYNKENPFD FMEHISLEGK TNFFEKRVGE 360
  361 YQKMGVMSGG NTGDSHAFTL DADF

Type	Start	End	Confidence
Non-Cytoplasmic	1	217	0.91
Transmembrane Helix	218	238	0.56
Cytoplasmic	239	384	0.50