YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGS20_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLSQDNQQ GHQKHFSRPS RRIQFLPPPW TEAYNVNVHQ TVENEGCATA MHNVKLLGSP  60
   61 AAPTLLSLLS GTLSGFARFF ALLLRRPPPE APLRRRDFSA LIPALPAAVL SPGHEERPGR 120
  121 LSLLLRAALA LPGRPPGGRL PREVDASAGQ SSSIPPMGSE WMEMRKRPVC AAQEPTACAP 180
  181 GQPGVENQGS NACCFCWCCC CSCSCLTVRN QEEQRLRRTS YEARTEDLPT CEESPGPTLE 240
  241 EASAWAQSFD KLMLTPAGRN AFREFLRTEF SEENMLFWMA CEELKKEANK ATIEEKARII 300
  301 YEDYISILSP KEVSLDSRVR ETINRSMAEP SRNIFDDAQL QIYTLMHRDS YPRFMNSALY 360
  361 KDLLRSLSEK AVEA

Type	Start	End	Confidence
Cytoplasmic	1	60	0.44
Transmembrane Helix	61	82	0.67
Non-Cytoplasmic	83	374	0.87