YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBSC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	48	0.66
Transmembrane Helix	49	68	0.83
Cytoplasmic	69	73	0.57
Transmembrane Helix	74	93	0.80
Non-Cytoplasmic	94	97	0.72
Transmembrane Helix	98	119	0.91
Cytoplasmic	120	125	0.81
Transmembrane Helix	126	145	0.91
Non-Cytoplasmic	146	169	0.86
Transmembrane Helix	170	190	0.93
Cytoplasmic	191	220	0.92
Transmembrane Helix	221	240	0.89
Non-Cytoplasmic	241	251	0.69
Transmembrane Helix	252	270	0.59
Cytoplasmic	271	274	0.48
Transmembrane Helix	275	297	0.74
Non-Cytoplasmic	298	298	0.37
Transmembrane Helix	299	316	0.46
Cytoplasmic	317	321	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQTVSGRR YFTKAWLMEQ KSLIALLVLI AIVSTLSPNF FTINNLFNIL QQTSVNAIMA  60
   61 VGMTLVILTS GIDLSVGSLL ALTGAVAASI VGIEVNALVA VAAALALGAA IGAVTGVIVA 120
  121 KGRVQAFIAT LVMMLLLRGV TMVYTNGSPV NTGFTENADL FGWFGIGRPL GVPTPVWIMG 180
  181 IVFLAAWYML HHTRLGRYIY ALGGNEAATR LSGINVNKIK IIVYSLCGLL ASLAGIIEVA 240
  241 RLSSAQPTAG TGYELDAIAA VVLGGTSLAG GKGRIVGTLI GALILGFLNN GLNLLGVSSY 300
  301 YQMIVKAVVI LLAVLVDNKK Q