YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RL3R2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSNSSASL PTLFWVNGSG DSVLSTDGAA MPVQFLVLRI MVALAYGLVG IIGLLGNLAV  60
   61 LWVLGNCGQR VPGLSSDTFV FSLALADLGL ALTLPFWATE SAMDFHWPFG SALCKVVLTT 120
  121 TVLSIYASTF LITALSIARY WVVAMAVGPG SHLSVFWARV VTLAVWVAAA LVTVPTAIFG 180
  181 AEVELWGVCL CLLRFPSRYW LGAYQLQRVV LAFIVPLGVI TTSYLLLLAF LERQQRCRPR 240
  241 QWQDSRVVAR SVRVLVASFA LCWVPNHVVT LWEILVRFDL VPWDSTFYTF HTYILPITTC 300
  301 LAHSNSCLNP VIYCLLRREP QQVLVSSFRA LWSRLWPQRK ACMEQMALKE VGGRTVASTQ 360
  361 ESGSSRTHTN TMEHLDEGCS LNTLLSETYQ GQSPQILGRS SCSLSQAAVS PGEV

Type	Start	End	Confidence
Cytoplasmic	1	12	0.51
Transmembrane Helix	13	30	0.41
Non-Cytoplasmic	31	41	0.62
Transmembrane Helix	42	65	0.89
Cytoplasmic	66	77	0.72
Transmembrane Helix	78	99	0.91
Non-Cytoplasmic	100	115	0.77
Transmembrane Helix	116	143	0.77
Cytoplasmic	144	154	0.78
Transmembrane Helix	155	178	0.87
Non-Cytoplasmic	179	208	0.86
Transmembrane Helix	209	231	0.94
Cytoplasmic	232	250	0.93
Transmembrane Helix	251	271	0.89
Non-Cytoplasmic	272	291	0.83
Transmembrane Helix	292	313	0.74
Cytoplasmic	314	414	0.85