YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QRFPR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALNITAEQ FSRLLSAHNL TREQFIHRYG LRPLVYTPEL PARAKVAFAL AGALIFALAL  60
   61 FGNSLVIYVV TRSKAMRTVT NIFICSLALS DLLIAFFCIP VTMLQNISDK WLGGAFICKM 120
  121 VPFVQSTAVV TEILTMTCIA VERHQGLVHP FKMKWQYTTR RAFTILGVVW LAAIIVGSPM 180
  181 WHVQRLEIKY DFLYEKEHIC CLEEWASPVH QRIYSTFILV ILFLLPLVVM LVLYSKIGYE 240
  241 LWIKKRVGDS SALQTIHGKE MSKIARKKKR AVIMMVTVVA LFAACWAPFH VVHMMVEYSN 300
  301 FEKEYDDVTI KMVFAVAQTI GFFNSICNPF VYAFMNENFK KNFLSAVCYC IVKESSSPAR 360
  361 KPGNSGISMM QKRAKLSRPQ RPVEETKGDT FSDASIDVKL CEQPREKRQL KRQLAFFSSE 420
  421 LSENSTFGSG HEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.90
Transmembrane Helix	47	70	0.91
Cytoplasmic	71	78	0.85
Transmembrane Helix	79	103	0.87
Non-Cytoplasmic	104	120	0.78
Transmembrane Helix	121	141	0.85
Cytoplasmic	142	161	0.91
Transmembrane Helix	162	183	0.91
Non-Cytoplasmic	184	213	0.97
Transmembrane Helix	214	235	0.94
Cytoplasmic	236	270	0.96
Transmembrane Helix	271	292	0.94
Non-Cytoplasmic	293	313	0.90
Transmembrane Helix	314	334	0.85
Cytoplasmic	335	433	0.91