YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260853, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLKKAFWKL ASLLPLSLLL FLGGCDKKLA VLNPQGPVAK AQYDLIVWSF LLMSLIIAIV  60
   61 FILFTVILIR YREKPENMDY EPPEQHGNTL LEIIWTLVPV IIVIALSIPT VKATYASEEV 120
  121 PKESKHIKPV EIYVTSANWK WLFSYPEEKI ETVNYLNIPA GVPIQFKLTS VGPMNAFWVP 180
  181 ELGGMKYTMD GMIMDLYLQA DKPGSYLGRS ANFSGEGFTH MEFEVEAKTK EKYDKWVKEV 240
  241 QQTAPKLTED KYNEIVKPGV VGRMTFSSHH LSYVDPKSLE YCDYNYYKNK K

Type	Start	End	Confidence
Signal Peptide	1	25	0.70
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	45	0.89
Transmembrane Helix	46	69	0.92
Cytoplasmic	70	89	0.91
Transmembrane Helix	90	111	0.77
Non-Cytoplasmic	112	291	0.82