YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QCRC_GEOTD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRGKGMKFV GDSRIPAVRK PNIPKDYSEY PGKTEVFWPN FLLKEWLVGS VFLVGFLCLT  60
   61 VAHPSPLERI ADPTDTTYIP LPDWYFLFLY QLLKYSYASG PYTVIGAIVM PGLAFGALLL 120
  121 APFLDRGPER RPWKRPVATG MMLLTLAAIV YLTWESVVTH DWEKAAEQGK IRAEVEIDTN 180
  181 AEGYKIAQAN TCTSCHGENL SGGAGPSLVG TGLTAEEIAK IAKEGQGSMP GGIFKGTDEE 240
  241 LQKMANSSPA

Type	Start	End	Confidence
Cytoplasmic	1	45	0.89
Transmembrane Helix	46	64	0.94
Non-Cytoplasmic	65	101	0.86
Transmembrane Helix	102	124	0.90
Cytoplasmic	125	135	0.84
Transmembrane Helix	136	154	0.89
Non-Cytoplasmic	155	250	0.90