YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTS3B_STRMU, PTS...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.97
Transmembrane Helix	109	130	0.89
Non-Cytoplasmic	131	157	0.90
Transmembrane Helix	158	179	0.86
Cytoplasmic	180	186	0.75
Transmembrane Helix	187	209	0.85
Non-Cytoplasmic	210	235	0.51
Transmembrane Helix	236	255	0.84
Cytoplasmic	256	268	0.46
Transmembrane Helix	269	292	0.87
Non-Cytoplasmic	293	303	0.53
Transmembrane Helix	304	331	0.71
Cytoplasmic	332	353	0.41
Transmembrane Helix	354	376	0.83
Non-Cytoplasmic	377	383	0.33
Transmembrane Helix	384	405	0.59
Cytoplasmic	406	412	0.53
Transmembrane Helix	413	435	0.83
Non-Cytoplasmic	436	452	0.48
Transmembrane Helix	453	474	0.86
Cytoplasmic	475	664	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYSKVASEV ITAVGKDNLV AAAHCATRLR LVLKDDSKVD QKALDKNADV KGTFKTDGQY  60
   61 QVIIGPGDVN FVYDEIIKQT GLTEVSTDDL KKIAASGKKF NPIMALIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL NNFLTSEGLF GTKSLVQQFP IIKGSSDMIQ LMSAAPFWFL PILVGISAAK 180
  181 RFGANQFLGA SIGMIMVAPG AANIIGLAAN APISKAATIG AYTGFWNIFG LHVTQASYTY 240
  241 QVIPVLVAVW LLSILEKFFH KRLPSAVDFT FTPLLSVIIT GFLTFIVIGP VMKEVSDWLT 300
  301 NGIVWLYDTT GFLGMGVFGA LYSPVVMTGL HQSFPAIETQ LISAFQNGTG HGDFIFVTAS 360
  361 MANVAQGAAT FAIYFLTKDK KMKGLSSSSG VSALLGITEP ALFGVNLKYR FPFFCALIGS 420
  421 ASAAAIAGLL QVVAVSLGSA GFLGFLSIKA SSIPFYVVCE LISFAIAFAV TYGYGKTKAV 480
  481 DVFAAEAAVE EAIEEVQEIP EEAASAANKA QVTDEVLAAP LAGEAVELTS VNDPVFSSEA 540
  541 MGKGIAIKPS GNTVYAPVDG TVQIAFDTGH AYGIKSDNGA EILIHIGIDT VSMEGKGFEQ 600
  601 KVQADQKIKK GDVLGTFDSD KIAEAGLDNT TMFIVTNTAD YASVETLASS GTVAVGDSLL 660
  661 EVKK