YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTRC_KLEPN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQIIA IFIFSCIAGM GSVLDEFQTH RPLIACTVIG LILGDLKTGV MLGGTLELIA  60
   61 LGWMNVGAAQ SPDSALASII SAILVIVGHQ SIAIGIAIAL PVAAAGQVLT VFARTITVVF 120
  121 QHAADKAAEE ARFRTIDLLH VSALGVQGLR VAIPALVVSL FVSADMVSSM LSAIPEFVTR 180
  181 GLQIAGGFIV VVGYAMVLRM MGVKYLMPFF FLGFLAGGYL DFSLLAFGGV GVIIALIYIQ 240
  241 LNPQWRKAEP AASTAPSAPA LDQLDD

Type	Start	End	Confidence
Cytoplasmic	1	5	0.54
Transmembrane Helix	6	24	0.91
Non-Cytoplasmic	25	32	0.44
Transmembrane Helix	33	67	0.60
Cytoplasmic	68	75	0.45
Transmembrane Helix	76	110	0.73
Non-Cytoplasmic	111	147	0.62
Transmembrane Helix	148	169	0.78
Cytoplasmic	170	180	0.54
Transmembrane Helix	181	202	0.86
Non-Cytoplasmic	203	217	0.62
Transmembrane Helix	218	239	0.91
Cytoplasmic	240	266	0.74