YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTPC1_ECOLI, PTP...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEITLLQGL SLAALVFVLG IDFWLEALFL FRPIIVCTLT GAILGDIQTG LITGGLTELA  60
   61 FAGLTPAGGV QPPNPIMAGL MTTVIAWSTG VDAKTAIGLG LPFSLLMQYV ILFFYSAFSL 120
  121 FMTKADKCAK EADTAAFSRL NWTTMLIVAS AYAVIAFLCT YLAQGAMQAL VKAMPAWLTH 180
  181 GFEVAGGILP AVGFGLLLRV MFKAQYIPYL IAGFLFVCYI QVSNLLPVAV LGAGFAVYEF 240
  241 FNAKSRQQAQ PQPVASKNEE EDYSNGI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.42
Transmembrane Helix	6	31	0.76
Cytoplasmic	32	33	0.31
Transmembrane Helix	34	67	0.61
Non-Cytoplasmic	68	98	0.48
Transmembrane Helix	99	122	0.82
Cytoplasmic	123	141	0.80
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	177	0.77
Transmembrane Helix	178	200	0.88
Cytoplasmic	201	208	0.71
Transmembrane Helix	209	237	0.79
Non-Cytoplasmic	238	267	0.85