YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTM3C_PASMU, PTM...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	48	0.73
Transmembrane Helix	49	70	0.83
Cytoplasmic	71	79	0.68
Transmembrane Helix	80	103	0.87
Non-Cytoplasmic	104	133	0.81
Transmembrane Helix	134	155	0.85
Cytoplasmic	156	171	0.63
Transmembrane Helix	172	190	0.56
Non-Cytoplasmic	191	213	0.61
Transmembrane Helix	214	235	0.87
Cytoplasmic	236	242	0.64
Transmembrane Helix	243	264	0.78
Non-Cytoplasmic	265	269	0.61
Transmembrane Helix	270	293	0.87
Cytoplasmic	294	311	0.52
Transmembrane Helix	312	335	0.89
Non-Cytoplasmic	336	624	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSANAKVKV QNFGRFLSNM VMPNIGAFIA WGFITALFIP TGWLPNETLA KLVGPMITYL  60
   61 LPLLIGYSGG KLIAGERGAV VGAIATAGVI VGTDIPMFLG AMIAGPTGGW AIKRFDKWAD 120
  121 GKIKSGFEML VNNFSSGIIG MILAILFFWL IGPAVKALST MLAAGVDILV KAHLLPLTSI 180
  181 FVEPAKILFL NNAINHGIFS PLGIQQSQEF GQSIFFLIEA NPGPGLGVLL AYIIFGKGTA 240
  241 KQTAGGATII HFFGGIHEIY FPYVLMNPRL LLAVIAGGVS GVFTLVLFNA GLVAPASPGS 300
  301 IIAVLLMTPQ NAIVGVLASV AIAATVSFVI ASFFLKIQKE ENGHSLEKMQ AASKAMKSGV 360
  361 QFNTPARYQG VQKIFVACDA GMGSSAMGAS MLRKKVKEAG LAIEVTNCAI NDLPEDAQLV 420
  421 ITHQDLTLRA KKHTPNAMHF SLNNFLDAHF YDNLVQDLSN TKVADLAKVS TLEPQEAPQT 480
  481 AFVLTEKQVF LGLKAANKEE AIRFAGERLV ESGFVLPSYV DAMFEREKMV STYLGEGIAV 540
  541 PHGTIEAKDA VLKTGVVVCQ YPEGVKFNED EEDSIAKLVI GIAAKNNEHL QVVSAITNAL 600
  601 DNEDAIRILS ETDDVEKVLA LLKA