YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTG3C_GEOSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLLNVKIGMT FSGGVIDFLL FGVLPNRTAW WLVIPVGLVF AVIYYFGFRF AIRKWDLATP  60
   61 GREKTVEEAP KAEAAAAGDL PYEVLAALGG KENIEHLDAC ITRLRVSVHD IGRVDKDRLK 120
  121 ALGAAGVLEV GNNVQAIFGP KSDMLKGQIQ DIMQGKAPAR AEEKPKTAAS EAAESETIAS 180
  181 PMSGEIVPLA EVPDQVFSQK MMGDGFAVMP TDGTVVSPVD GKIINVFPTK HAIGIQSAGG 240
  241 HEILIHVGID TVKLNGQGFE ALVKEGDEVK KGQPILRVDL DYVKQNAPSI VTPVIFTNLQ 300
  301 AGETVHVNKQ GPVARGEDAV VTIR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.61
Transmembrane Helix	7	24	0.62
Non-Cytoplasmic	25	28	0.72
Transmembrane Helix	29	48	0.93
Cytoplasmic	49	324	0.87