YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTEC_GEOSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	53	0.94
Non-Cytoplasmic	54	71	0.93
Transmembrane Helix	72	93	0.93
Cytoplasmic	94	102	0.77
Transmembrane Helix	103	122	0.92
Non-Cytoplasmic	123	142	0.91
Transmembrane Helix	143	163	0.91
Cytoplasmic	164	182	0.91
Transmembrane Helix	183	205	0.91
Non-Cytoplasmic	206	221	0.89
Transmembrane Helix	222	244	0.85
Cytoplasmic	245	250	0.67
Transmembrane Helix	251	270	0.91
Non-Cytoplasmic	271	295	0.94
Transmembrane Helix	296	315	0.96
Cytoplasmic	316	324	0.86
Transmembrane Helix	325	345	0.61
Non-Cytoplasmic	346	351	0.50
Transmembrane Helix	352	373	0.90
Cytoplasmic	374	382	0.45
Transmembrane Helix	383	400	0.63
Non-Cytoplasmic	401	404	0.59
Transmembrane Helix	405	424	0.86
Cytoplasmic	425	451	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRFIRMLED RVMPVAGKIA EQRHLQAIRD GIILSMPLLI IGSLFLIVGF LPIPGYNEWM  60
   61 AKWFGEHWLD KLLYPVGATF DIMALVVSFG VAYRLAEKYK VDALSAGAIS LAAFLLATPY 120
  121 QVPFTPEGAK ETIMVSGGIP VQWVGSKGLF VAMILAIVST EIYRKIIQKN IVIKLPDGVP 180
  181 PAVARSFVAL IPGAAVLVVV WVARLILEMT PFESFHNIVS VLLNKPLSVL GGSVFGAIVA 240
  241 VLLVQLLWST GLHGAAIVGG VMGPIWLSLM DENRMVFQQN PNAELPNVIT QQFFDLWIYI 300
  301 GGSGATLALA LTMMFRARSR QLKSLGRLAI APGIFNINEP ITFGMPIVMN PLLIIPFILV 360
  361 PVVLVVVSYA AMATGLVAKP SGVAVPWTTP IVISGYLATG GKISGSILQI VNFFIAFAIY 420
  421 YPFFSIWDKQ KAAEEQADPT ISSGAGATHS L