YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTV3B_BACHD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	124	0.89
Non-Cytoplasmic	125	143	0.86
Transmembrane Helix	144	165	0.89
Cytoplasmic	166	171	0.81
Transmembrane Helix	172	193	0.89
Non-Cytoplasmic	194	214	0.88
Transmembrane Helix	215	238	0.92
Cytoplasmic	239	256	0.90
Transmembrane Helix	257	279	0.92
Non-Cytoplasmic	280	298	0.71
Transmembrane Helix	299	322	0.86
Cytoplasmic	323	336	0.64
Transmembrane Helix	337	357	0.92
Non-Cytoplasmic	358	366	0.64
Transmembrane Helix	367	388	0.86
Cytoplasmic	389	394	0.65
Transmembrane Helix	395	419	0.82
Non-Cytoplasmic	420	439	0.68
Transmembrane Helix	440	462	0.93
Cytoplasmic	463	636	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYEQLAKDI IQHVGGKENV ISVVHCITRL RFKLKDEGKA NTDVLKNMDG IVTVMKSGGQ  60
   61 YQVVIGNHVP DVYKDVVEIG GFQNQAETET EDEKKYQGLF NKFIDIIASI FTPVLGVLAA 120
  121 TGMIKGLNAL FLSTGVLEEA NGTYQLLHAI GDSLFYFFPI FLGYTAAKKF GATPFIGMAI 180
  181 GASLVYPTLV VLTEGEPLYT LFTGTIFESP VHITFLGIPV ILMSYATSVI PIILAAYFAS 240
  241 KVEARLRKII PDVVKTFLVP FFTLLIVVPL TFIVIGPIAT WAGQLLGQFT LWVYNLSPII 300
  301 AGAFLGGFWQ VFVIFGLHWG LIPIAINNLV VQGSDPVLAM VFAASFAQIG AVAAVWLKIK 360
  361 QQKVKTLSVP AFISGIFGVT EPAIYGVTLP LKRPFIISCI AAAVGGAIIG LFRSQGYIIG 420
  421 GLGIFGIPSF LHPADGMDAG FWGIVIAVVV AFVLGFILTY LFGLKSGNAS DEQTETKAHT 480
  481 STGTGEKEEI SSPFNGSVIT LSEIKDEAFS SGALGEGIAI EPSEGKLFSP VSGMVTALYP 540
  541 THHALGITTD RGAELLIHIG LDTVQLDGKF FTAHTIQGAQ VEKGDLLIEF DIKEIKAAGY 600
  601 AVTTPVIVTN HKQYGQLFLT DKQQVNAGDR LLELTR