YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT2A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.79
Transmembrane Helix	132	155	0.66
Non-Cytoplasmic	156	159	0.37
Transmembrane Helix	160	184	0.83
Cytoplasmic	185	188	0.42
Transmembrane Helix	189	211	0.82
Non-Cytoplasmic	212	246	0.50
Transmembrane Helix	247	267	0.77
Cytoplasmic	268	272	0.57
Transmembrane Helix	273	294	0.91
Non-Cytoplasmic	295	300	0.45
Transmembrane Helix	301	320	0.48
Cytoplasmic	321	362	0.83
Transmembrane Helix	363	381	0.76
Non-Cytoplasmic	382	396	0.85
Transmembrane Helix	397	420	0.81
Cytoplasmic	421	429	0.93
Transmembrane Helix	430	450	0.92
Non-Cytoplasmic	451	478	0.91
Transmembrane Helix	479	501	0.89
Cytoplasmic	502	510	0.90
Transmembrane Helix	511	534	0.90
Non-Cytoplasmic	535	540	0.81
Transmembrane Helix	541	561	0.94
Cytoplasmic	562	610	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIEEQITK SDSDFIISED QSYLSKEKKA DGSATINQAD EQSSTDELQK SMSTGVLVNG  60
   61 DLYPSPTEEE LATLPSVCGT IPWKAFIIII VELCERFAYY GLTVPFQNYM QFGPKDATPG 120
  121 ALNLGETGAD GLSNFFTFWC YVTPVGAALI ADQFLGRYNT IVCSAVIYFI GILILTCTAI 180
  181 PSVIDAGKSM GGFVVSLIII GLGTGGIKSN VSPLMAEQLP KIPPYVKTKK NGSKVIVDPV 240
  241 VTTSRAYMIF YWTINVGSLS VLATTSLEST KGFVYAYLLP LCVFVIPLII LAVSKTAFTS 300
  301 TLLPPVPSLF VLVKCSSLLL KTNLISKKLN HLALLLLERY VKDQWDDLFI DELKRALRAC 360
  361 KTFLFYPIYW VCYGQMTNNL ISQAGQMQTG NVSNDLFQAF DSIALIIFIP ICDNIIYPLL 420
  421 RKYNIPFKPI LRITLGFMFA TASMIYAAVL QAKIYQRGPC YANFTDTCVS NDISVWIQIP 480
  481 AYVLIAFSEI FASITGLEFA FTKAPPSMKS IITALFLFTN AFGAILSICI SSTAVNPKLT 540
  541 WMYTGIAVTA FIAGIMFWVC FHHYDAMEDE QNQLEFKRND ALTKKDVEKE VHDSYSMADE 600
  601 SQYNLEKANC