YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSTC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATKPAFNP PGKKGDIIFS VLVKLAALIV LLMLGGIIVS LIISSWPSIQ KFGLAFLWTK  60
   61 EWDAPNDIYG ALVPIYGTLV TSFIALLIAV PVSFGIALFL TELAPGWLKR PLGIAIELLA 120
  121 AIPSIVYGMW GLFIFAPLFA VYFQEPVGNI MSNIPIVGAL FSGPAFGIGI LAAGVILAIM 180
  181 IIPYIAAVMR DVFEQTPVMM KESAYGIGCT TWEVIWRIVL PFTKNGVIGG IMLGLGRALG 240
  241 ETMAVTFIIG NTYQLDSASL YMPGNSITSA LANEFAEAES GLHVAALMEL GLILFVITFI 300
  301 VLAASKFMIM RLAKNEGAR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	78	0.88
Transmembrane Helix	79	100	0.93
Cytoplasmic	101	117	0.77
Transmembrane Helix	118	141	0.85
Non-Cytoplasmic	142	160	0.86
Transmembrane Helix	161	185	0.85
Cytoplasmic	186	225	0.85
Transmembrane Helix	226	249	0.72
Non-Cytoplasmic	250	284	0.88
Transmembrane Helix	285	309	0.82
Cytoplasmic	310	319	0.95